HsaEX0015239 @ hg19
Exon Skipping
Gene
ENSG00000128656 | CHN1
Description
chimerin (chimaerin) 1 [Source:HGNC Symbol;Acc:1943]
Coordinates
chr2:175779786-175809671:-
Coord C1 exon
chr2:175809616-175809671
Coord A exon
chr2:175783262-175783293
Coord C2 exon
chr2:175779786-175779899
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCTTTCCCAATAGGTG
3' ss Score
11.91
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTACCTGTACTTGCGAG
Seq A exon
GTGGAAAACAGACCAAAGTATTATGGAAGAGA
Seq C2 exon
GTTTCATGGCATGATCTCCAGAGAAGCAGCCGACCAGCTCTTGATTGTGGCTGAGGGGAGCTACCTCATCCGGGAGAGCCAGCGGCAGCCAGGGACCTACACTTTGGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128656-'5-11,'5-8,9-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(0.1=0.0)
C2:
PF0001719=SH2=PU(53.5=97.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCCTCATCCTCGAAGAA
R:
CTCTCCCGGATGAGGTAGCTC
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)