HsaEX0015239 @ hg38
Exon Skipping
Gene
ENSG00000128656 | CHN1
Description
chimerin 1 [Source:HGNC Symbol;Acc:HGNC:1943]
Coordinates
chr2:174915058-174944943:-
Coord C1 exon
chr2:174944888-174944943
Coord A exon
chr2:174918534-174918565
Coord C2 exon
chr2:174915058-174915171
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCTTTCCCAATAGGTG
3' ss Score
11.91
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTACCTGTACTTGCGAG
Seq A exon
GTGGAAAACAGACCAAAGTATTATGGAAGAGA
Seq C2 exon
GTTTCATGGCATGATCTCCAGAGAAGCAGCCGACCAGCTCTTGATTGTGGCTGAGGGGAGCTACCTCATCCGGGAGAGCCAGCGGCAGCCAGGGACCTACACTTTGGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128656-'13-22,'13-18,19-22
Average complexity
C1
Mappability confidence:
88%=78=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(0.1=0.0)
C2:
PF0001719=SH2=PU(53.5=97.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCCTCATCCTCGAAGAA
R:
CTCTCCCGGATGAGGTAGCTC
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development