MmuEX0011329 @ mm9
Exon Skipping
Gene
ENSMUSG00000056486 | Chn1
Description
chimerin (chimaerin) 1 [Source:MGI Symbol;Acc:MGI:1915674]
Coordinates
chr2:73544976-73554476:-
Coord C1 exon
chr2:73554421-73554476
Coord A exon
chr2:73548512-73548543
Coord C2 exon
chr2:73544976-73545089
Length
32 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCCTTTTCCTGTAGGTA
3' ss Score
12.68
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TATACCAGCTGCAGCAGGAAGCCCCTCACCCTCGAAGGGTCACCTGCACTTGTGAG
Seq A exon
GTAGAAAACAGACCAAAGTATTATGGAAGAGA
Seq C2 exon
GTATCATGGCATGATCTCTAGAGAAGAGACTGACCAGCTCCTGAGTGTGGCTGAGGGGAGCTACCTCATCCGTGAGAGCCAGCGGCAGCCAGGAACGTACACTTTGGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056486-'8-8,'8-6,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.252 A=0.057 C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(0.1=0.0)
C2:
PF0001719=SH2=PU(53.5=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCACCTGCACTTGTGAG
R:
AAAGTGTACGTTCCTGGCTGC
Band lengths:
125-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: