BtaEX0009009 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003130 | CHRNA3
Description
Bos taurus cholinergic receptor, nicotinic, alpha 3 (neuronal) (CHRNA3), mRNA. [Source:RefSeq mRNA;Acc:NM_174719]
Coordinates
chr21:31500106-31511513:-
Coord C1 exon
chr21:31511404-31511513
Coord A exon
chr21:31505331-31506342
Coord C2 exon
chr21:31500106-31500234
Length
1012 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGTTTGTTTTCACAGTGC
3' ss Score
9.61
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCTGGAACGACTACAAGCTGAAGTGGAACCCGTCCGACTACGACGGGGCCGAGTTCATGCGCGTCCCTGCGCAGAAGATCTGGAAGCCAGACATTGTACTGTACAACAA
Seq A exon
TGCTGTTGGGGATTTCCAAGTGGACGACAAGACCAAAGCTTTACTCAAGTACACGGGGGAAGTGACTTGGATCCCCCCAGCCATCTTTAAGAGCTCATGCAAAATCGACGTGACCTACTTCCCGTTTGATTACCAGAACTGCACCATGAAGTTCGGTTCCTGGTCCTACGACAAGGCAAAAATCGACCTGGTCCTGATCGGCTCCTCCATGAACCTCAAGGACTACTGGGAGAGCGGCGAGTGGGCCATCATCAAAGCCCCTGGCTACAAGCACGACATCAAGTACAACTGCTGCGAGGAGATCTACCCGGACATCACCTACTCGCTCTACATCCGGCGCCTGCCCCTGTTCTACACCATCAACCTCATCATCCCCTGCCTGCTCATCTCCTTCCTGACTGTGCTCGTCTTCTACCTGCCTTCCGACTGCGGTGAGAAGGTGACCCTCTGCATCTCGGTGCTCCTCTCCTTGACCGTGTTTCTCCTGGTGATCACCGAGACCATCCCGTCCACCTCACTGGTGATTCCCCTGATCGGCGAGTACCTGCTCTTCACCATGATCTTTGTAACCTTGTCCATCGTCATCACCGTCTTCGTGCTCAACGTGCACTACAGGACCCCGACCACCCACACGATGCCCGCATGGGTGAAGACCATATTCTTGAACTTGCTTCCCAGGGTCATGTTCATGACCAGGCCAGCAAGCAACGAGGGCAACACTCAGAGGCCAAGACCCTTCTATAGCGCTGAGCTCTCAAACCTGAATTGCTTCAGCCGCATAGAGTCCAAGGTCTGCAAGGAAGGCTACCCCTGCCAGGACGGGCTGTGCGGCTACTGCCACCATCGCAGGGCAAAAATCTCCAATTTCAGTGCCAACCTCACGAGAAGCTCCAGTTCTGAGTCTGTTGACGCTGTGCTGTCCCTCTCTGCTCTGTCACCGGAAATCAAAGAAGCTATCCAAAGTGTCAAGTATATTGCTGAAAATATGAAAGCACAAAATGAAGCCAAAGAG
Seq C2 exon
ATTCAAGACGATTGGAAATATGTTGCCATGGTGATTGATCGTATTTTTCTGTGGGTTTTTATCCTGGTGTGCATTTTAGGGACGGCAGGATTGTTTCTACAACCCTTGATGACCAGGGACGACGCGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003130_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.4=100)
A:
PF0293118=Neur_chan_LBD=PD(55.6=34.0),PF0293211=Neur_chan_memb=PU(86.7=63.6)
C2:
PF0293211=Neur_chan_memb=PD(12.5=72.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAACGACTACAAGCTGA
R:
TTACGCGTCGTCCCTGGTC
Band lengths:
238-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development