GgaEX6050563 @ galGal4
Exon Skipping
Gene
ENSGALG00000015382 | CHRNA6
Description
neuronal acetylcholine receptor subunit alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990695]
Coordinates
chrZ:53430592-53435522:+
Coord C1 exon
chrZ:53430592-53430701
Coord A exon
chrZ:53430822-53431809
Coord C2 exon
chrZ:53434648-53435522
Length
988 bp
Sequences
Splice sites
3' ss Seq
TGCCTCATTTGTCTTTCTAGTGC
3' ss Score
9.15
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCTGGAATGACTACAAATTGCGATGGGATCCCAGAGAATATGATGGAATTGAATTTGTTCGGGTACCAGCAGATAAAATTTGGAAACCAGATATTGTCTTATACAATAA
Seq A exon
TGCTGTGGGAGATTTTCAAGTTGAAGGCAAGACCAAAGCCCTTCTTCGCTACGATGGGATGATCACCTGGACCCCACCAGCTATATTTAAAAGCTCCTGTCCCATGGATATTACTTTTTTCCCATTTGATCATCAGAACTGTTCATTGAAATTTGGTTCTTGGACTTACGACAAAGCCAAAATTGATCTTCTGATCATTGGCTCCAAAGTAGATATGAATGAGTTTTGGGAAAATAGCGAGTGGGAAATAGTTGATGCTTCTGGCTACAAACATGACATCAAATATAACTGCTGTGAAGAGATCTACACAGATATAACATATTCATTTTATATTCGAAGGCTGCCAATGTTCTACACCATAAATCTGATTATTCCCTGTCTCTTCATCTCATTCCTGACTGTGCTAGTTTTTTACCTGCCATCTGACTGTGGTGAGAAGGTGACTCTTTGCATCTCTGTGTTGCTTTCTTTGACTGTATTTTTACTAGTGATCACAGAAACAATTCCATCTACCTCTTTAGTAATACCCCTCGTAGGTGAATATTTGCTCTTCACTATGATATTTGTGACTCTCTCCATTGTCATCACCGTGTTTGTCTTAAATATACATTACAGAACTCCTACTACACACACAATGCCCAAATGGGTGAAAACTGTCTTTCTTAGCCTGCTCCCCAAAGTTCTGTTGATGCAGCGGCCTCTGGAGCAGGAGAAAAAAAACATCTCCAAAAAGACCAAGAAAGGATCGGCCAAAACATCAGGCAAATCAAAGCACAGCAAACACAAAGATAACAAATTACATAAGGAGCAACGGTGTTGTCACTGTGATAAAGCAGACGATCTCACCTCAACCAGAAGAAGTCAACTGAGTCATCAGTCACTGAAATGGATGGCAGAGCACACAGAGTACTCCCCAGAAGTGAAAGATGTCATCAACAATGTTCAGTTCATCGCAGAGAACATGAAGTCTCAGAATGAAACCAAAGAG
Seq C2 exon
GTGGAAGATGATTGGAAATACGTGGCTATGGTGATTGACAGAGTATTTCTCTGGGTGTTTATAATCCTTTGTGTGTTTGGGACTGCTGGATTATTTATCCAACCACTAATAGCAGATACATAACTTGAGTCATAGCTTTTTTTTCCACTTACGTTTGTATTCCATTTTCAGTTTGGAACTGTCCCTTGTATTTCTCTCCTCTTATATCATCCCTCAGCATCTAGCCCCACTGGGAAGGAGAGAGGGGAAGACTCCTCTGGGCAAGCAACAATCTAAGGCAGAATGAGAAGGGAACTGAAAATGTGAGATTGAGCTTGTGGTCTCTCTAAGACAGAGTGGCTGAGATTTACAGAGTGCCTGTCTGTCTGCTCAATTCAGTAGCAATTGCACCAAGAATCACTGTAGTGGGCAGAAAATACTGAGCTTCTCCCATGGTTTCAGTTCAGGGGGCCACTGTGAGTGATTTGTGCTAAGAGAACAAAAGTCTCACTTTTCTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015382-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.4=100)
A:
PF0293118=Neur_chan_LBD=PD(55.6=34.8),PF103294=DUF2417=WD(100=48.5),PF0293211=Neur_chan_memb=PU(86.2=62.7)
C2:
PF0293211=Neur_chan_memb=PD(12.9=75.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAAATTGCGATGGGATCCC
R:
CTTCCCCTCTCTCCTTCCCAG
Band lengths:
350-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]