BtaEX0009015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019242 | CHRNB1
Description
Bos taurus cholinergic receptor, nicotinic, beta 1 (muscle) (CHRNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174516]
Coordinates
chr19:27759876-27766382:+
Coord C1 exon
chr19:27759876-27760085
Coord A exon
chr19:27763139-27763362
Coord C2 exon
chr19:27765282-27766382
Length
224 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTCTGTCCCCCAAGGAG
3' ss Score
9.34
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAATGGCCAATGGGAGATTATCCACAAGCCTTCTCGGCTAATTCAGCCTTCAGTGGATCCTAGGGGAGGCGGGGAAGGACGACGTGAAGAAGTCACCTTCTACCTCATCATTCGCCGGAAGCCTCTCTTTTACCTGGTCAACGTCATTGCCCCATGCATCCTCATCACTCTCCTGGCCATCTTTGTCTTCTACCTGCCACCGGATGCAG
Seq A exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGTTGACCCTCACTGTGTTCCTGCTGCTGCTGGCAGACAAAGTACCTGAGACCTCCCTGTCTGTCCCCATCATTATCAAGTACCTCATGTTCACCATGGTCCTCGTCACCTTCTCAGTCATCCTTAGTGTTGTGGTCCTCAACTTGCACCATCGCTCACCCCACACCCACCAAATGCCCCTTTGGGTTCGTCAG
Seq C2 exon
CTGAAGGAGGACTGGCAATTTGTGGCCATGGTAGTGGACCGCCTCTTCCTATGGACCTTCATCATCTTCACGAGCGTTGGGACCCTCGTCATCTTTCTGGATGCCACGTACCACTTGCCCCCCGCCGACCCTTTTCCTTGAGGCTGGGACGAAGGTGGAGATCCAGATCCTTGGCCAGGTGAATTGAGAGTTTGGCAGGGCTCTTAAGCCCTGTACCTTTCTGCATCTTAACTCCATCACTAGGAGTCCAGTTCTCTCATCATTTCATTTCTAAGGAGGGAGCCTAAATGGGACTAGGCATTTGGGGGACTTGGGCCCACCTGAAATGCACTAACAGTTTATTATTCTTTGGCTTCTTGAGGAAGCTCCGTTGGATGTTAACACCTATGCTGGCAATGAATGGAACAAACGACAAGAACTAGACTGTATGCCTTCTAAGGGCAGAAACTCTGTCTTGTTCACTGTAATATCCCGGGCACCTAGCACAGATCCTAACCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019242_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(18.7=57.7),PF0293211=Neur_chan_memb=PU(81.5=31.0)
A:
PF0293211=Neur_chan_memb=FE(31.0=100)
C2:
PF0293211=Neur_chan_memb=PD(13.0=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGAAGCCTCTCTTTTACC
R:
GCTTAAGAGCCCTGCCAAACT
Band lengths:
305-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development