RnoEX6048094 @ rn6
Exon Skipping
Gene
ENSRNOG00000014698 | Chrnb1
Description
cholinergic receptor nicotinic beta 1 subunit [Source:RGD Symbol;Acc:2349]
Coordinates
chr10:56392290-56399786:-
Coord C1 exon
chr10:56399577-56399786
Coord A exon
chr10:56393473-56393696
Coord C2 exon
chr10:56392290-56392462
Length
224 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCTTCTGTCTCCCAGGAG
3' ss Score
9.93
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAATGGTCAATGGGAGATTATCCACAAACCCTCTAGGTTAATCCACCTTCCAGGGGATCGAAGAGGAGGGAAGGAAGGACATCGTGAGGAAGTTATCTTCTATCTCATTATTCGGAGGAAGCCTCTCTTCTACCTGGTCAATGTCATTGCCCCGTGCATCCTCATCACCCTCCTGGCCATCTTTGTTTTCTACCTTCCACCAGATGCAG
Seq A exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGCTGACCCTCACTGTGTTCTTGCTGCTGCTGGCCGACAAAGTGCCTGAGACCTCCCTGGCGGTCCCCATCATCATCAAGTATCTCATGTTTACCATGATCCTTGTCACCTTCTCAGTTATCCTTAGCGTTGTGGTCCTCAACTTGCACCATCGCTCACCCCACACCCACCAAATGCCCTTTTGGGTCCGCCAG
Seq C2 exon
ATCTTCATTCACAAGCTCCCTCCATACCTGGGTCTGAAGAGGCCCAAACCCGAGAGAGACCAACTACCCGAACCACATCACTCCTTCTCCCCAAGGAGTGGCTGGGGCCGAGGAACTGATGAATATTTCATACGGAAGCCTCCATGTGATTTTCTTTTCCCTAAACTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014698-'7-14,'7-13,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(18.7=57.7),PF0293211=Neur_chan_memb=PU(81.5=31.0)
A:
PF0293211=Neur_chan_memb=FE(31.4=100)
C2:
PF0293211=Neur_chan_memb=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCACCTTCCAGGGGATCG
R:
ATTCATCAGTTCCTCGGCCCC
Band lengths:
294-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]