GgaEX1015446 @ galGal3
Exon Skipping
Gene
ENSGALG00000007899 | F1NJ26_CHICK
Description
NA
Coordinates
chr9:16708081-16708753:+
Coord C1 exon
chr9:16708081-16708192
Coord A exon
chr9:16708302-16708416
Coord C2 exon
chr9:16708552-16708753
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCCCCACCCCCGTAGGTA
3' ss Score
10.53
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTGGTGAGAAGATGACTCTGGTGATCTCAGTGCTCCTGGCCCAGTCTGTCTTCCTCCTGCTGGTCTCCCAGCGCCTGCCTGCCACCTCCCACGCCATCCCCCTCATTGGCAA
Seq A exon
GTACCTTCTGTTCATCATGCTGCTGGTGACGGCTGTGGTGGTGATCTGCGTTGTGGTCCTCAACTTCCATTTCCGCACCCCCAGCACTCACGTCATGTCTGATTGGGTCAAAGAG
Seq C2 exon
GTGTTCCTGGAGATCCTGCCCCGCTTGTTGCACATGTCACACCCAGCTGAGAGCCCAGCAGGTGCCCCGTGCATCCGGCGCTGCAGCTCGGCTGGGTACATCGCCAAGGCAGATGAATACTACAGCGTCAAGTCCCGCAGCGAGCTCATGTTTGAGAAGCAGTCAGAGAGGCACGGGCTGGCCAGCCGTGTCACCCCTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.8=100),PF0000317=7tm_3=PU(33.6=97.4)
A:
PF0293211=Neur_chan_memb=FE(16.2=100),PF0000317=7tm_3=FE(34.5=100)
C2:
PF0293211=Neur_chan_memb=FE(28.6=100),PF0000317=7tm_3=PD(30.0=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGTCTTCCTCCTGCTGG
R:
TGCCTCTCTGACTGCTTCTCA
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]