BtaEX6012173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011390 | CHRND
Description
Bos taurus cholinergic receptor, nicotinic, delta (CHRND), mRNA. [Source:RefSeq mRNA;Acc:NM_174271]
Coordinates
chr2:120979180-120980747:+
Coord C1 exon
chr2:120979180-120979291
Coord A exon
chr2:120979381-120979495
Coord C2 exon
chr2:120980543-120980747
Length
115 bp
Sequences
Splice sites
3' ss Seq
GACTGTACCTGCGCCTACAGGTT
3' ss Score
7.56
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGTGAGAAGACATCCATGGCCATCTCGGTGCTCCTGGCCCAGTCTGTCTTCCTGCTGCTCATCTCCAAGCGGCTGCCAGCCACGTCCATGGCCATCCCCCTCATCGGCAA
Seq A exon
GTTCCTGCTCTTTGGCATGGTGCTGGTGACCATGGTCGTGGTGATCTGTGTCATCGTGCTCAACATTCACTTCCGCACACCCAGCACCCACGTGCTGTCTGAGCCGGTGAAGAAG
Seq C2 exon
CTCTTCCTGGAGACCCTTCCCGAGATCCTGCACATGTCCCGTCCGGCAGAGGACGGGCCCAGCCCCGGGACCCTGATCCGGAGAAGCAGCTCCCTGGGCTACATCTCCAAGGCAGAGGAGTACTTCTCGCTCAAGTCCCGAAGTGACCTCATGTTTGAGAAGCAATCAGAGCGGCATGGGCTGGCCCGGCGCCTCACCACGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011390-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.6=100)
A:
PF0293211=Neur_chan_memb=FE(16.0=100)
C2:
PF0293211=Neur_chan_memb=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGTCTTCCTGCTGCTCA
R:
ATGCCGCTCTGATTGCTTCTC
Band lengths:
247-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]