RnoEX6040754 @ rn6
Exon Skipping
Gene
ENSRNOG00000019527 | Chrnd
Description
cholinergic receptor nicotinic delta subunit [Source:RGD Symbol;Acc:2352]
Coordinates
chr9:94291678-94293607:+
Coord C1 exon
chr9:94291678-94291789
Coord A exon
chr9:94291871-94291985
Coord C2 exon
chr9:94293403-94293607
Length
115 bp
Sequences
Splice sites
3' ss Seq
GGCACGCTGTGTGTCCTCAGGTT
3' ss Score
8.69
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGAGAGAAGACCTCGGTGGCCATCTCAGTGCTCCTGGCCCAATCTGTCTTCCTGTTGCTTATCTCCAAGAGGCTGCCGGCCACATCCATGGCCATTCCTTTGGTAGGCAA
Seq A exon
GTTCCTGCTTTTTGGCATGGTGCTGGTCACCATGGTTGTGGTGATCTGCGTCATCGTGCTCAACATCCACTTCCGAACACCCAGCACGCATGTTCTGTCTGAGGGAGTCAAGAAG
Seq C2 exon
TTCTTCCTGGAGACTCTGCCCAAGCTCCTGCACATGTCCCGCCCAGAAGAAGAAGACCCGGGCCCCAGGGCTCTTATCCGGAGGACCAGCTCTCTGGGATACATCTCCAAGGCAGAGGAGTACTTCTCACTTAAGTCCCGCAGTGACCTCATGTTTGAGAAGCAATCAGAGCGGCATGGGCTGGCCCGGCGCCTCACCACAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019527-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.246
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.6=100)
A:
PF0293211=Neur_chan_memb=FE(16.0=100)
C2:
PF0293211=Neur_chan_memb=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCCAATCTGTCTTCCTG
R:
ATGCCGCTCTGATTGCTTCTC
Band lengths:
254-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]