MmuEX6026009 @ mm10
Exon Skipping
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:87195485-87197487:+
Coord C1 exon
chr1:87195485-87195596
Coord A exon
chr1:87195683-87195797
Coord C2 exon
chr1:87197283-87197487
Length
115 bp
Sequences
Splice sites
3' ss Seq
GGCATGCTGTGTGCTCTCAGGTT
3' ss Score
7.9
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGAGAGAAGACCTCCGTGGCCATCTCAGTGCTCCTGGCCCAATCTGTCTTCCTGCTGCTTATCTCCAAGAGGCTGCCGGCCACTTCCATGGCCATCCCCTTGGTAGGCAA
Seq A exon
GTTCCTGCTTTTCGGCATGGTGCTGGTCACCATGGTGGTGGTGATCTGTGTCATCGTACTGAACATCCACTTCCGGACGCCCAGCACCCATGTGCTGTCTGAGGGAGTCAAGAAG
Seq C2 exon
TTCTTCCTGGAGACCCTGCCCAAGCTCCTGCACATGTCCCGCCCAGCAGAGGAAGACCCAGGCCCCAGGGCTCTCATCCGGAGAAGCAGCTCTCTGGGATACATCTGCAAAGCAGAGGAGTATTTCTCACTTAAGTCCCGCAGTGACCTCATGTTTGAGAAGCAATCAGAGCGGCATGGGCTGGCCCGGCGCCTCACCACAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-'1-20,'1-15,12-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.6=100)
A:
PF0293211=Neur_chan_memb=FE(16.0=100)
C2:
PF0293211=Neur_chan_memb=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAATCTGTCTTCCTGCTGC
R:
ATGCCGCTCTGATTGCTTCTC
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types