DreEX6095283 @ danRer10
Exon Skipping
Gene
ENSDARG00000019342 | chrnd
Description
cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
Coordinates
chr24:25540645-25543105:-
Coord C1 exon
chr24:25542994-25543105
Coord A exon
chr24:25542267-25542381
Coord C2 exon
chr24:25540645-25540855
Length
115 bp
Sequences
Splice sites
3' ss Seq
AATGTTTTTGTATTTGACAGGTA
3' ss Score
9.51
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
GTGGAGAGAAGATGACGCTGTCAATCTCTGTGCTTCTGGCTCAGTCTGTGTTCCTGCTGCTGATTTCACAGCGTCTGCCTGAGACGTCTATGGCTGTTCCTTTAATTGTCAA
Seq A exon
GTATCTGATGTTTATCATGGTGTTGGTCACTGTGGTGGTGTTGAATTGTGTCATTGTGTTGAACCTGCATTTTCGGACGCCCAGCACACACGTCATGACGGAATGGACCAAAGAG
Seq C2 exon
TTCTTTTTGGAGCGTCTTCCTCGTCTCCTGCACATGTCCCTTCCAGTCGAAGACCAACCGGTCCCAGAATCAGCACTGCCCCGGCGCTCCAGCTCATTAGGATACATCGCCCAGGCTGAGGAGTATTACAGTGTTAAATCCCGCAGCGAGCTGATGTTCGAGAAGCAGTCGGAAAGGCATGGTTTGGCCGCTCGTCCCACTCCCAAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019342-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.5=100)
A:
PF0293211=Neur_chan_memb=FE(15.9=100)
C2:
PF0293211=Neur_chan_memb=FE(29.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGCTGTCAATCTCTGTGC
R:
CTCGCTGCGGGATTTAACACT
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]