BtaEX0009016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019242 | CHRNB1
Description
Bos taurus cholinergic receptor, nicotinic, beta 1 (muscle) (CHRNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174516]
Coordinates
chr19:27763139-27764531:+
Coord C1 exon
chr19:27763139-27763362
Coord A exon
chr19:27763852-27764033
Coord C2 exon
chr19:27764384-27764531
Length
182 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCATCTACTCTGCAGATC
3' ss Score
9.2
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGTTGACCCTCACTGTGTTCCTGCTGCTGCTGGCAGACAAAGTACCTGAGACCTCCCTGTCTGTCCCCATCATTATCAAGTACCTCATGTTCACCATGGTCCTCGTCACCTTCTCAGTCATCCTTAGTGTTGTGGTCCTCAACTTGCACCATCGCTCACCCCACACCCACCAAATGCCCCTTTGGGTTCGTCAG
Seq A exon
ATCTTTATCCACAAACTCCCTCTGTACCTGGGTCTGAAGAGGCCCAAACCTGAGAGAGACCAGATGCAGGAGCCACCTTCCATAGCTCCCAGGGATTCTCCAGGAAGTGGCTGGGGTCGGGGAACAGATGAATATTTCATCCGCAAGCCACCAAATGATTTTCTCTTCCCCAAACCCAACAG
Seq C2 exon
GTTCCAGCCTGAACTGTCTGCTCCAGACCTGCGGCGATTTATCGATGGTCCAAACCGGGCTGTGGGTCTCCCTCCTGAGCTACGGGAGGTCGTTTCTTCGATCAGCTACATCGCTCGACAGCTGCAGGAACAGGAAGACCATGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019242_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.279 C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(31.0=100)
A:
PF0293211=Neur_chan_memb=FE(25.1=100)
C2:
PF0293211=Neur_chan_memb=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGTCTGTCCCCATCAT
R:
TCGAAGAAACGACCTCCCGTA
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development