MmuEX6086766 @ mm9
Exon Skipping
Gene
ENSMUSG00000041189 | Chrnb1
Description
cholinergic receptor, nicotinic, beta polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87890]
Coordinates
chr11:69598552-69600606:-
Coord C1 exon
chr11:69600383-69600606
Coord A exon
chr11:69599209-69599381
Coord C2 exon
chr11:69598552-69598699
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATGTCACTTCTACTGTATAGATC
3' ss Score
5.15
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGCTGACGCTCACTGTGTTCTTGCTGCTGTTGGCCGACAAAGTGCCTGAGACCTCCCTGGCGGTGCCCATCATTATCAAGTACCTCATGTTTACCATGGTCCTTGTCACCTTCTCCGTTATCCTTAGTGTTGTGGTCCTCAACCTGCATCATCGCTCACCCCACACCCACCAAATGCCCTTTTGGGTCCGCCAG
Seq A exon
ATCTTCATTCACAAGCTCCCTCCATACCTGGGTCTGAAGAGGCCCAAACCCGAGAGAGACCAACTCCCTGAACCACATCACTCTCTTTCTCCAAGAAGTGGCTGGGGCAGAGGAACTGATGAATATTTCATCCGGAAGCCTCCAAGTGATTTTCTTTTCCCTAAACTTAACAG
Seq C2 exon
GTTTCAGCCTGAATCATCTGCCCCGGACCTGCGACGATTTATCGATGGTCCAACCCGGGCTGTAGGTCTGCCTCAGGAGCTACGAGAGGTCATTTCCTCAATCAGCTACATGGCCCGACAGCTTCAGGAACAGGAGGACCACGACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041189-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.276 C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(31.4=100)
A:
PF0293211=Neur_chan_memb=FE(24.2=100)
C2:
PF0293211=Neur_chan_memb=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAAAGTGCCTGAGACCTC
R:
GACCTCTCGTAGCTCCTGAGG
Band lengths:
251-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: