RnoEX0021223 @ rn6
Exon Skipping
Gene
ENSRNOG00000014698 | Chrnb1
Description
cholinergic receptor nicotinic beta 1 subunit [Source:RGD Symbol;Acc:2349]
Coordinates
chr10:56391811-56393696:-
Coord C1 exon
chr10:56393473-56393696
Coord A exon
chr10:56392290-56392462
Coord C2 exon
chr10:56391811-56391958
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATAATATGTCACTTCTATAGATC
3' ss Score
7.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGCTGACCCTCACTGTGTTCTTGCTGCTGCTGGCCGACAAAGTGCCTGAGACCTCCCTGGCGGTCCCCATCATCATCAAGTATCTCATGTTTACCATGATCCTTGTCACCTTCTCAGTTATCCTTAGCGTTGTGGTCCTCAACTTGCACCATCGCTCACCCCACACCCACCAAATGCCCTTTTGGGTCCGCCAG
Seq A exon
ATCTTCATTCACAAGCTCCCTCCATACCTGGGTCTGAAGAGGCCCAAACCCGAGAGAGACCAACTACCCGAACCACATCACTCCTTCTCCCCAAGGAGTGGCTGGGGCCGAGGAACTGATGAATATTTCATACGGAAGCCTCCATGTGATTTTCTTTTCCCTAAACTTAACAG
Seq C2 exon
GTTTCAGCCTGAATCACCTGCTCCGGACCTGAGACGATTTATCGATGGTCCACCCCGGGCTGTAGGTCTGCCTCAGGAGCTACGCGAGGTCATTTCTTCCATCAGCTACATGGCCCGACAACTTCAGGAACAGGAGGACCACGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014698-'9-15,'9-14,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.224 C2=0.020
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(31.4=100)
A:
PF0293211=Neur_chan_memb=FE(24.2=100)
C2:
PF0293211=Neur_chan_memb=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTCCCCATCATCATCAAG
R:
GGGCCATGTAGCTGATGGAAG
Band lengths:
251-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]