DreEX6004787 @ danRer10
Exon Skipping
Gene
ENSDARG00000022532 | chrnb1l
Description
cholinergic receptor, nicotinic, beta 1 (muscle) like [Source:ZFIN;Acc:ZDB-GENE-060811-1]
Coordinates
chr7:22324169-22335743:+
Coord C1 exon
chr7:22324169-22324392
Coord A exon
chr7:22324479-22324657
Coord C2 exon
chr7:22335602-22335743
Length
179 bp
Sequences
Splice sites
3' ss Seq
TATGGTCTAACCCTCTGCAGGTT
3' ss Score
8.97
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAGAAGATGACTCTGTCCATCTCAGTCCTCATTGCACTCACTGTTTTCATGCTGCTGCTGGCTGACAAAGTTCCAGAAACATCACTTGCCATTCCTATCATTGTTAACTATGTCATGTTTACTATGATCCTGGTCACTTTCTCCGTCATCCTTAGCGTGGTAGTCCTAAACCTCCACCACAGGACACCCAGCACACACCACATGCCCGGATGGGTGCGCAAG
Seq A exon
GTTTTCATCAACTTACTGCCTCGCTACTTGGGTGTGCTGAGGCCCACCCCTGAGGAACCAGTGGAGGAAGAGCCAAAAGAAAACGTCCCAATGGGTTGTTTGGGAAATAGCCTCAGACCTGGAGGTGAATATTTTATCCGAAAGATCAATCCAGAGCTGGTAATGCCATGGAGAGGAAG
Seq C2 exon
CCATAACGAGAGCACTGTGAAGTTGCAGAGGTTTTCAAACAGTGACAACTATTGTCTGATTCTGCCTCCCAATCTCAAATCTGCCATCGCTGCCATCACATACATGTCTGAACAATTGAAGAAGCAGGATGTGGATGATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022532-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.217 C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(31.4=100)
A:
PF0293211=Neur_chan_memb=FE(25.0=100)
C2:
PF0293211=Neur_chan_memb=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGCTGACAAAGTTCCAG
R:
GCAGATTTGAGATTGGGAGGCA
Band lengths:
251-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]