DreEX0021708 @ danRer10
Exon Skipping
Gene
ENSDARG00000069660 | chrnb1
Description
cholinergic receptor, nicotinic, beta 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-070821-4]
Coordinates
chr7:22292146-22305735:+
Coord C1 exon
chr7:22292146-22292369
Coord A exon
chr7:22297074-22297249
Coord C2 exon
chr7:22305588-22305735
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCATTTCTTCTAGATA
3' ss Score
9.91
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGAAGATGGGTCTTTCCATCAATGTACTGCTGACTTTGACTGTCTTTCTGCTTCTGCTGGCCAACAAAATCCCAGAAACATCTCTGGGTGTTCCTATTATTGTCAACTACCTGATGATAACCATGATCCTGGTCACCTTTTCTGTCATCCTCAGTGTCGTGGTGCTCAACCTTCACCATCGCTCACCAAACACACACCAAATGCCCCTCTGGGTGCGCAAG
Seq A exon
ATATTTATCCATATGCTGCCTCCATACTTGGGAATGCTGCGACCTAAAGTGGAGACCCCTCTGTTTCTTGAAAAACCTGCCAAAAAGGAGAACATTCAAGCCATCAGCAGAGTAGCAGACGAGTACTTCATCCGCAAGCCCAGCAACATGAACTTCCTCTTCCCTAAACCCCACAG
Seq C2 exon
ATACCAGCCTGACGGTCAGTGCACCGACCTGAGGAAGTTCATCGACGGCCCGAGTCATTACCTCACTCTTCCTCCAGAACTCAAGACTGCCGTGGAGGCCATCACTTACATCGCAGAGCAGCTCCAGGCCGAGAAAGATTATGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069660_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(31.2=100)
A:
PF0293211=Neur_chan_memb=FE(24.5=100)
C2:
PF0293211=Neur_chan_memb=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTCTGCTTCTGCTGGC
R:
AGTGAGGTAATGACTCGGGCC
Band lengths:
248-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]