BtaEX0009118 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73570183-73574825:-
Coord C1 exon
chr2:73574718-73574825
Coord A exon
chr2:73572338-73572364
Coord C2 exon
chr2:73570183-73570350
Length
27 bp
Sequences
Splice sites
3' ss Seq
GGTCTGCTCTCATAACCCAGGAT
3' ss Score
4.95
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTCGGATCCGCACGCGACGGCAGAGCTCCGGGAGTGCCACCAACGTCGCCTCTACACCTGCCGATAGTCGGGGCCGCAGTCGCGCCAAAGTGGTCTCGCAGTCCCAGC
Seq A exon
GATCCAGATCTGCTAATCCTGCTGGTG
Seq C2 exon
CTGGCAGCCGATCCAGTTCCCCAGGGAAATTGTTGGGAAGTGGTTATAGTGGCCTTACTGGGGGTTCCTCAAGAGGCCCACCTGTGACACCCTCTTCAGAAAAACGAAGCAAGATTCCCAGGAGTCAGGGATGTAGTCGAGAAACAAGTCCAAACCGCATAGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781-'31-30,'31-29,32-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTACACCTGCCGATAGT
R:
GAACCCCCAGTAAGGCCACTA
Band lengths:
128-155
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLIP2 or YWHAG. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development