GgaEX0017560 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25645146-25648703:-
Coord C1 exon
chr7:25648596-25648703
Coord A exon
chr7:25647122-25647148
Coord C2 exon
chr7:25645146-25645313
Length
27 bp
Sequences
Splice sites
3' ss Seq
GGTCTGCCCTCATAATCAAGGAT
3' ss Score
3.69
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTCGGATTCGTACGAGGAGGCAGAGCTCTGGCAGTGCTACCAGCGTCACCTCAACACCTGCTGACACCCGAGGCCGCAGCCGGGCTAAAGTGGTTTCCCAGTCCCAGC
Seq A exon
GATCCAGATCAGCTAATCCTGCTGGTG
Seq C2 exon
CTGGTAGTCGGTCTAGTTCTCCGGGTAAGCTGTTAGGAAGCTCCTATGGTGGCTTGAGCAGTGGAACATCCAGAGTTCAACCTGTGCCATCATCTTCAGAGAAGCGCAGCAAGATCCCCCGGAGCCAGGGATGCAGTCGAGAGACGAGTCCCAACAGAATAGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000019030fB2067
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTCAACACCTGCTGAC
R:
CACTGCTCAAGCCACCATAGG
Band lengths:
127-154
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLIP2 or YWHAG. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]