RnoEX0021454 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34498749-34502090:+
Coord C1 exon
chr13:34498749-34498850
Coord A exon
chr13:34500248-34500274
Coord C2 exon
chr13:34501923-34502090
Length
27 bp
Sequences
Splice sites
3' ss Seq
GGTCTGCTGTGCTAACGAAGGAT
3' ss Score
1.26
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
TCCGCACCAGACGGCAGAGCTCCGGGAGCACCACCAATGTTGCCTCCACATCCTCCGACAGTCGGGGCCGCAGTCGAGCCAAAGTGGTTTCACAGTCTCAGC
Seq A exon
GATCCAGATCTGCTAACCCTGCTGGTG
Seq C2 exon
CTGGCAGCCGGTCAAGTTCCCCCGGGAAGCTTTTGGGAAGTGGTTATGGTGGACTCGCTGGGGGCTCCTCAAGAGGCCCACCTGTAACACCATCTTCAGAGAAGAGAAGCAAGATCCCCAGGAGTCAGGGATGCAGCCGAGAAACAAGCCCTAACCGGATTGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376-'46-41,'46-40,47-41
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGTTGCCTCCACATCC
R:
ACCACTTCCCAAAAGCTTCCC
Band lengths:
114-141
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLIP2 or YWHAG. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]