DreEX0021914 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38441559-38446146:+
Coord C1 exon
chr9:38441559-38441666
Coord A exon
chr9:38443640-38443666
Coord C2 exon
chr9:38445982-38446146
Length
27 bp
Sequences
Splice sites
3' ss Seq
GCCTCGCCTCCATACACAAGGAT
3' ss Score
1.41
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTCGTGTTCGGACCAGAAGGCAGAGCTCAGGGAGTGCGGTAAGCGCCAACAGCACTGTGACAGACAGCCGTGGCCGAAGCAGAGCTAAAGTCGTGTCTCAGTCCCAGC
Seq A exon
GATCCAGATCAGCTAACACAACTAGTG
Seq C2 exon
CCGGCAGCCGATCCAGTTCACCAGGGAAGCTTTTGGGACATGCGTATGGCAGAATTCCTAGAGCCACTGCGCCAACAACTCCCTCAGACAAGTACTCCAGAATCCCACGAAGCCAGGGATGCAGCCGTGAGACCAGCCCCAATAGACTGGGCATAGGTAGGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGCACTGTGACAGACA
R:
TGCCATACGCATGTCCCAAAA
Band lengths:
114-141
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLIP2 or YWHAG. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]