GgaEX0017560 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27719303-27722860:-
Coord C1 exon
chr7:27722753-27722860
Coord A exon
chr7:27721279-27721305
Coord C2 exon
chr7:27719303-27719470
Length
27 bp
Sequences
Splice sites
3' ss Seq
GGTCTGCCCTCATAATCAAGGAT
3' ss Score
3.69
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTCGGATTCGTACGAGGAGGCAGAGCTCTGGCAGTGCTACCAGCGTCACCTCAACACCTGCTGACACCCGAGGCCGCAGCCGGGCTAAAGTGGTTTCCCAGTCCCAGC
Seq A exon
GATCCAGATCAGCTAATCCTGCTGGTG
Seq C2 exon
CTGGTAGTCGGTCTAGTTCTCCGGGTAAGCTGTTAGGAAGCTCCTATGGTGGCTTGAGCAGTGGAACATCCAGAGTTCAACCTGTGCCATCATCTTCAGAGAAGCGCAGCAAGATCCCCCGGAGCCAGGGATGCAGTCGAGAGACGAGTCCCAACAGAATAGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_CASSETTE5
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTCAACACCTGCTGAC
R:
CACTGCTCAAGCCACCATAGG
Band lengths:
127-154
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLIP2 or YWHAG. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]