BtaEX0009132 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7827941-7835410:-
Coord C1 exon
chr22:7835267-7835410
Coord A exon
chr22:7830919-7831062
Coord C2 exon
chr22:7827941-7828047
Length
144 bp
Sequences
Splice sites
3' ss Seq
TATATGTCTTTGTTTTCTAGGCA
3' ss Score
10.17
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
Exon sequences
Seq C1 exon
GTGAAGGTTGCTATCCTCAAATACATAGAAACTCTGGCCAAACAGATGGATCCAGGAGATTTTGTAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACCTGGACAACAGAACCCAAAAGTTCTGATGTTCGGAAG
Seq A exon
GCAGCGCAGTCAGTCCTGATTTCCTTATTTGAACTCAATACCCCAGAGTTTACAATGTTATTAGGAGCTTTACCAAAAACTTTTCAGGATGGTGCTACCAAACTTCTTCATAATCACCTTCGAAACACTGGCAATGGAACCCAG
Seq C2 exon
GGTTCCATGGGAAGTCCTTTGACAAGACCAACACCACGGTCACCAGCCAACTGGTCCAGTCCTCTTACTTCTCCTACCAATACGTCGCAGAATACTTTATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.188 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGTTGCTATCCTCAAATACA
R:
TGGAGATAAAGTATTCTGCGACGT
Band lengths:
249-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development