RnoEX0021492 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122158247-122163526:+
Coord C1 exon
chr8:122158247-122158390
Coord A exon
chr8:122161039-122161182
Coord C2 exon
chr8:122163420-122163526
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTTGTTCCTTTGTAGGCA
3' ss Score
11.52
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTGAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAGGAGATTTTATAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACCTGGACGACAGAGCCCAAAAGCTCTGATGTTCGAAAG
Seq A exon
GCAGCACAGTCGGTGCTGATTTCTTTGTTTGAACTCAATACCCCAGAGTTTACAATGTTACTAGGAGCTTTACCAAAAACTTTCCAGGATGGTGCTACTAAACTTCTTCACAATCACCTTCGAAACACTGGCAATGGCACTCAG
Seq C2 exon
AGTTCCATGGGGAGTCCTTTGACGAGACCAACACCTCGGTCACCAGCCAACTGGTCCAGTCCTCTTACTTCTCCTACCAACACGTCACAGAATACGTTATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'61-63,'61-61,62-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.7=100)
A:
PF123483=CLASP_N=PD(15.9=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGTGGCTATCCTTAAGT
R:
AACGTATTCTGTGACGTGTTGGT
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]