GgaEX1015628 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45266721-45272362:-
Coord C1 exon
chr2:45272219-45272362
Coord A exon
chr2:45267257-45267400
Coord C2 exon
chr2:45266721-45266827
Length
144 bp
Sequences
Splice sites
3' ss Seq
TAATCTACATTTTCTTCTAGGCT
3' ss Score
7.14
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTAAAAGTTGCAATTCTTAAATACATAGAGACTCTTGCACAACAGATGGATCCAGGGGATTTTGTAAATTCAAGTGAAACTAGGTTAGCAGTGTCTCGAATCATCACCTGGACCACAGAACCTAAAAGCTCAGATGTTAGGAAG
Seq A exon
GCTGCACAGTCAGTACTCATTTCCCTTTTTGAACTTAATACTCCTGAGTTTACAATGCTGCTGGGTGCTTTACCAAAAACATTTCAGGATGGAGCCACAAAGCTTCTTCATAATCATCTCCGAAATACAGGCAACAGTGGTCAG
Seq C2 exon
GGTTCAATGGGAAGTCCTTTGACAAGACCTACTCCATGCTCCCCAGCAAGCTGGTCAAGTCCTCTCACTTCCCCAACCAATACATCGCAGAACACTTTGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'75-90,'75-88,76-90
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.205 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.7=100)
A:
PF123483=CLASP_N=PD(15.9=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAATACATAGAGACTCTTGCACA
R:
TGGTGACAAAGTGTTCTGCGA
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]