DreEX0021948 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43220997-43223204:+
Coord C1 exon
chr19:43220997-43221140
Coord A exon
chr19:43221737-43221880
Coord C2 exon
chr19:43223098-43223204
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTGTGTTGATTTCAGGCG
3' ss Score
8.12
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GTGAAGGTGGCCATTTTGAAGTACATTGAAACACTGACACTACAAATGGAGCCGCAGGATTTCGTCAACACGGGTGAAACCAGACTGGCAGTGTCGCGTATCATTACGTGGACCACCGAACCCAAGAGCTCAGATGTCAGAAAG
Seq A exon
GCGGCGCAGTCAGTGTTGATCTCGCTGTTCCAGCTGAACACGCCGGAGTTCACAATGCTTCTGGGCGCACTTCCTAAAACCTTTCAGGACGGAGCCACTAAATTATTGCAGAACCACTTGCGAAACACAGGCAACACAGCGCAG
Seq C2 exon
GCGTCAATTGGAAGCCCACTTACCCGGCACACACCAAGATCACCAGCCAGTTGGTCGAGTCCTTTAACCTCTCCTACCAACACATCCCAAAACACACCTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.007 A=0.243 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.5=100)
A:
PF123483=CLASP_N=PD(16.6=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGTGGCCATTTTGAAGT
R:
TGGTGAAGGTGTGTTTTGGGA
Band lengths:
249-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]