HsaEX6054946 @ hg19
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33584925-33592887:-
Coord C1 exon
chr3:33592744-33592887
Coord A exon
chr3:33586190-33586333
Coord C2 exon
chr3:33584925-33585031
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGTATGCCTTTGTTTTTTAGGCA
3' ss Score
9.68
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGAAGGTTGCTATCCTTAAATACATAGAAACTCTGGCCAAACAGATGGATCCAGGAGATTTTATAAATTCCAGTGAAACTCGCCTAGCAGTGTCTCGGGTCATCACTTGGACAACAGAACCCAAAAGTTCTGATGTTCGGAAG
Seq A exon
GCAGCACAGTCAGTGCTGATTTCATTATTTGAACTCAATACCCCAGAGTTTACAATGTTATTAGGAGCTTTACCAAAAACTTTTCAGGATGGTGCTACCAAGCTTCTTCATAATCACCTTCGAAACACTGGCAATGGAACCCAG
Seq C2 exon
AGTTCCATGGGGAGTCCTTTGACAAGACCAACACCACGATCACCAGCTAACTGGTCCAGTCCTCTTACTTCTCCTACCAATACATCACAGAATACTTTATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-'61-68,'61-67,63-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.156 A=0.279 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.7=100)
A:
PF123483=CLASP_N=PD(15.9=75.0)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGTTGCTATCCTTAAATACA
R:
CTTGGAGATAAAGTATTCTGTGATGT
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)