BtaEX0009264 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34439543-34440581:-
Coord C1 exon
chr21:34440452-34440581
Coord A exon
chr21:34440148-34440230
Coord C2 exon
chr21:34439543-34439622
Length
83 bp
Sequences
Splice sites
3' ss Seq
CACCCCATTTTGGCTTTCAGAGC
3' ss Score
8.3
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCTGTGAGGAGAAGTCAGTGAAGAACACCAGCATCCGAGTGGCTGACTTCGGCAGTGCTACCTTTGACCATGAGCATCACACGACCATCGTGGCCACCCGTCACTATCGTCCACCTGAGGTGATCCTTG
Seq A exon
AGCTGGGCTGGGCACAGCCGTGCGATGTCTGGAGCATCGGCTGCATTCTCTTTGAGTACTACCGGGGCTTCACACTCTTCCAG
Seq C2 exon
ACCCACGAGAACCGAGAGCATTTGGTGATGATGGAGAAGATCCTAGGGCCCATCCCATCACACATGATCCACCGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACACCAGCATCCGAGTG
R:
CGGTGGATCATGTGTGATGGG
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development