RnoEX0021843 @ rn6
Exon Skipping
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62529616-62530875:-
Coord C1 exon
chr8:62530746-62530875
Coord A exon
chr8:62530108-62530190
Coord C2 exon
chr8:62529616-62529695
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTTACCATCTTGGCTTACAGAGC
3' ss Score
8
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGCTGCGAGGAGAAGTCAGTGAAGAACACCAGCATCCGAGTGGCAGACTTTGGCAGTGCCACATTTGACCATGAACATCACACCACCATTGTCGCCACCCGGCATTACCGCCCACCTGAGGTGATCCTTG
Seq A exon
AGCTGGGCTGGGCACAGCCCTGTGATGTCTGGAGTATCGGCTGCATTCTCTTTGAGTACTACCGTGGCTTTACACTCTTCCAG
Seq C2 exon
ACCCATGAAAACAGAGAACACTTGGTTATGATGGAGAAGATCCTAGGACCCATCCCATCACACATGATCCACCGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGAGTGGCAGACTTTGG
R:
CGGTGGATCATGTGTGATGGG
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]