GgaEX0001547 @ galGal3
Exon Skipping
Gene
ENSGALG00000001362 | Q5F445_CHICK
Description
NA
Coordinates
chr10:1855074-1855945:-
Coord C1 exon
chr10:1855816-1855945
Coord A exon
chr10:1855630-1855712
Coord C2 exon
chr10:1855074-1855153
Length
83 bp
Sequences
Splice sites
3' ss Seq
TAGCTTTATTCTCTTTGCAGAGC
3' ss Score
8.37
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGCTGTGAGGAGAAATCCATCCGGAACACGAGCATCCGCGTGGCAGACTTCGGAAGTGCCACCTTTGATCATGAGCACCACACCACTATCGTGGCTACCCGGCACTACCGTCCCCCAGAAGTGATCCTTG
Seq A exon
AGCTGGGCTGGGCGCAGCCATGCGATGTCTGGAGTACTGGCTGCATTTTGTTTGAGTATTACCGTGGCTTCACGCTCTTCCAG
Seq C2 exon
ACCCATGAGAATCGTGAGCATCTTGTGATGATGGAGAAAATCCTTGGTCCCATTCCATCTCACATGATCCACAGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(10.8=100)
C2:
PF0006920=Pkinase=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTTCGGAAGTGCCACC
R:
CGAGTTCTGTGGATCATGTGAGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]