GgaEX0001547 @ galGal4
Exon Skipping
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1974938-1975809:-
Coord C1 exon
chr10:1975680-1975809
Coord A exon
chr10:1975494-1975576
Coord C2 exon
chr10:1974938-1975017
Length
83 bp
Sequences
Splice sites
3' ss Seq
TAGCTTTATTCTCTTTGCAGAGC
3' ss Score
8.37
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGCTGTGAGGAGAAATCCATCCGGAACACGAGCATCCGCGTGGCAGACTTCGGAAGTGCCACCTTTGATCATGAGCACCACACCACTATCGTGGCTACCCGGCACTACCGTCCCCCAGAAGTGATCCTTG
Seq A exon
AGCTGGGCTGGGCGCAGCCATGCGATGTCTGGAGTACTGGCTGCATTTTGTTTGAGTATTACCGTGGCTTCACGCTCTTCCAG
Seq C2 exon
ACCCATGAGAATCGTGAGCATCTTGTGATGATGGAGAAAATCCTTGGTCCCATTCCATCTCACATGATCCACAGAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTTCGGAAGTGCCACC
R:
CGAGTTCTGTGGATCATGTGAGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]