HsaEX6075789 @ hg38
Exon Skipping
Gene
ENSG00000179335 | CLK3
Description
CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
Coordinates
chr15:74627539-74628683:+
Coord C1 exon
chr15:74627539-74627668
Coord A exon
chr15:74627970-74628052
Coord C2 exon
chr15:74628604-74628683
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTCCCCATCTTGGCTTGCAGAGC
3' ss Score
8.99
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGCTGTGAGGAGAAGTCAGTGAAGAACACCAGCATCCGAGTGGCTGACTTTGGCAGTGCCACATTTGACCATGAGCACCACACCACCATTGTGGCCACCCGTCACTATCGCCCGCCTGAGGTGATCCTTG
Seq A exon
AGCTGGGCTGGGCACAGCCCTGTGACGTCTGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGGGGCTTCACACTCTTCCAG
Seq C2 exon
ACCCACGAAAACCGAGAGCACCTGGTGATGATGGAGAAGATCCTAGGGCCCATCCCATCACACATGATCCACCGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(25.3=86.4)
A:
PF0006920=Pkinase=FE(14.4=100)
C2:
PF0006920=Pkinase=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGAGTGGCTGACTTTGG
R:
CGGTGGATCATGTGTGATGGG
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains