BtaEX0009267 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34440678-34442890:-
Coord C1 exon
chr21:34442774-34442890
Coord A exon
chr21:34441995-34442161
Coord C2 exon
chr21:34440678-34440772
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCCATCCGTCCTTCTCCAGCCT
3' ss Score
7.8
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGGAAGTCTCAGGTTGCCCTGAAGATCATCCGCAATGTAGGCAAGTACCGGGAGGCCGCCCGGCTAGAAATCAACGTTCTCAAGAAGATCAAGGAGAAGGACAAAGAGAACAAGTT
Seq A exon
CCTGTGCGTCTTGATGTCTGACTGGTTCAACTTCCACGGTCACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTTGAGTTCCTAAAGGAGAATAACTTCCAGCCTTACCCTCTACCACATGTCCGGCACATGGCCTACCAGCTCTGCCACGCCCTTAGAT
Seq C2 exon
TTCTACATGAGAACCAACTGACCCACACAGACTTGAAGCCAGAGAACATCCTGTTTGTGAATTCTGAGTTTGAAACCCTCTACAATGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGTCTCAGGTTGCCC
R:
TGTGCTCATTGTAGAGGGTTTCA
Band lengths:
210-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development