RnoEX6035978 @ rn6
Exon Skipping
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62530973-62532907:-
Coord C1 exon
chr8:62532791-62532907
Coord A exon
chr8:62532027-62532193
Coord C2 exon
chr8:62530973-62531067
Length
167 bp
Sequences
Splice sites
3' ss Seq
CACCTGTCTTTTTTCTCTAGCCT
3' ss Score
8.7
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGGGAAGTCACAGGTTGCCCTGAAGATCATCCGTAATGTGGGCAAGTACCGGGAAGCTGCTCGTCTAGAAATTAATGTTCTCAAGAAAATCAAGGAGAAAGACAAAGAAAATAAGTT
Seq A exon
CCTTTGTGTCCTGATGTCTGACTGGTTCAACTTCCATGGTCATATGTGTATCGCCTTTGAGCTCCTGGGCAAGAACACCTTTGAGTTCCTGAAGGAGAACAACTTCCAGCCTTATCCCCTACCACATGTCCGGCACATGGCCTACCAGCTCTGTCATGCCCTTAGAT
Seq C2 exon
TTCTACATGAGAACCAGCTGACCCACACAGACTTGAAGCCAGAGAACATCTTGTTTGTGAATTCTGAGTTTGAAACCCTCTACAATGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126-'24-13,'24-12,25-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGTCACAGGTTGCCC
R:
TGTGCTCATTGTAGAGGGTTTCA
Band lengths:
210-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]