GgaEX1015765 @ galGal4
Exon Skipping
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1976181-1977343:-
Coord C1 exon
chr10:1977227-1977343
Coord A exon
chr10:1976716-1976882
Coord C2 exon
chr10:1976181-1976275
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTCTTCTCTGTATAGCTT
3' ss Score
9.28
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AGGCAAATCGCAGGTGGCACTGAAAATCATAAAAAACGTTGGGAAGTACCGCGAGGCAGCCAGGCTGGAAATTAATGTCCTGAAGAAAATCAAAGAGAAGGACAAGGAGAACAAATT
Seq A exon
CTTGTGTGTCCTGATGTCAGACTGGTTCAACTTCCACGGCCACATGTGCATTGCCTTTGAACTTCTTGGCAAGAACACTTTTGAGTTCCTGAAGGAGAATAATTTCCAGCCATACCCTCTCCCTCAGATCCGGCACATGGCCTACCAGCTCTGCCATGCCTTGAAAT
Seq C2 exon
TTCTACATGACAACCAGCTGACTCACACTGACCTCAAGCCAGAAAACATCTTGTTTGTCAACTCTGACTTCGATACTCTGTACAACGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362-'9-7,'9-5,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAATCGCAGGTGGC
R:
TTTTCTCGTTGTACAGAGTATCGA
Band lengths:
210-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]