BtaEX0009574 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011741 | COL13A1
Description
Bos taurus collagen, type XIII, alpha 1 (COL13A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105433]
Coordinates
chr28:26365229-26368396:+
Coord C1 exon
chr28:26365229-26365255
Coord A exon
chr28:26366024-26366086
Coord C2 exon
chr28:26368343-26368396
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTTACCCCAAAGGGA
3' ss Score
8.89
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
GGTGAACCTGGGATCCCAGGAGCCAAG
Seq A exon
GGAGACCCAGGAGCAACAGGGAAGCCGGGGCCCCCAGGTTTGCCGGGAAAGAGGGGGCAGAGG
Seq C2 exon
GGTGAGAAGGGGGCTGCGGGGTCCCCCGGGCCACTCGGCCTCTTGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011741_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(11.3=100),PF0139113=Collagen=FE(12.3=100)
A:
PF0139113=Collagen=PD(18.3=61.9),PF0139113=Collagen=FE(30.8=100)
C2:
PF0139113=Collagen=FE(27.9=100)
Main Inclusion Isoform:
ENSBTAT00000039811fB1832
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACCTGGGATCCCA
R:
CTTCTGCCCCAAGAGGCC
Band lengths:
81-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development