GgaEX0005703 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12126490-12129216:+
Coord C1 exon
chr6:12126490-12126516
Coord A exon
chr6:12127148-12127210
Coord C2 exon
chr6:12129172-12129216
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTTCCCCATGAAGGGA
3' ss Score
7.72
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GGTGAGCCTGGGACTCCAGGAGAAAAG
Seq A exon
GGAGAGCCTGGAGTCCCAGGGAGGATGGGCCCCCCAGGTTTGCCAGGGAAAAGGGGGCAGCGG
Seq C2 exon
GGCGAGAAGGGCCGAGCTGGTGACCCTGGGCTCCCTGGCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.5=53.3),PF0139113=Collagen=PU(5.1=20.0)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=PD(13.3=27.6),PF0139113=Collagen=PU(28.8=58.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCCTGGGACTCCA
R:
GGAGCCCAGGGTCACCAG
Band lengths:
61-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]