GgaEX0005703 @ galGal4
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr6:10613561-10616287:+
Coord C1 exon
chr6:10613561-10613587
Coord A exon
chr6:10614219-10614281
Coord C2 exon
chr6:10616243-10616287
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTTCCCCATGAAGGGA
3' ss Score
7.72
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GGTGAGCCTGGGACTCCAGGAGAAAAG
Seq A exon
GGAGAGCCTGGAGTCCCAGGGAGGATGGGCCCCCCAGGTTTGCCAGGGAAAAGGGGGCAGCGG
Seq C2 exon
GGCGAGAAGGGCCGAGCTGGTGACCCTGGGCTCCCTGGCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX4-14/14=13-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.5=100)
A:
PF0139113=Collagen=FE(33.3=100)
C2:
PF0139113=Collagen=FE(14.9=100)
Main Inclusion Isoform:
ENSGALT00000006816fB617
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCCTGGGACTCCA
R:
GGAGCCCAGGGTCACCAG
Band lengths:
61-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]