BtaEX0009633 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37102520-37103679:+
Coord C1 exon
chr19:37102520-37102573
Coord A exon
chr19:37102852-37102959
Coord C2 exon
chr19:37103397-37103679
Length
108 bp
Sequences
Splice sites
3' ss Seq
AACCAGCTTCCTCCCTGCAGGGT
3' ss Score
8.81
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCTCTCCTGGTGAGCAAGGTCCTTCCGGAGCCTCTGGTCCTGCTGGTCCCCGC
Seq A exon
GGTCCCCCTGGCTCTGCTGGTTCTCCCGGCAAAGATGGACTCAATGGTCTCCCAGGCCCCATCGGTCCCCCTGGGCCTCGAGGTCGCACTGGTGATGCTGGTCCTGCT
Seq C2 exon
GGTCCTCCCGGCCCTCCTGGACCCCCTGGTCCCCCAGGTCCTCCCAGCGGCGGCTACGACTTGAGCTTCCTGCCCCAGCCACCTCAAGAGAAGGCTCACGATGGTGGCCGCTACTACCGGGCTGATGATGCCAATGTGGTCCGTGACCGTGACCTCGAGGTGGACACCACCCTCAAGAGCCTGAGCCAGCAGATCGAGAACATCCGGAGCCCTGAAGGCAGCCGCAAGAACCCCGCCCGCACCTGCCGTGACCTCAAGATGTGCCACTCTGACTGGAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103_MULTIEX1-41/41=40-C2
Average complexity
S*
Mappability confidence:
97%=95=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.853
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(22.2=77.8),PF0139113=Collagen=PU(12.9=44.4)
A:
PF0139113=Collagen=FE(56.5=100)
C2:
PF0139113=Collagen=PD(25.8=16.8),PF0141013=COLFI=PU(12.3=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTGAGCAAGGTCCTTC
R:
TCCGGATGTTCTCGATCTGCT
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development