RnoEX0023002 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82759531-82760383:+
Coord C1 exon
chr10:82759531-82759584
Coord A exon
chr10:82759908-82759971
Coord C2 exon
chr10:82760101-82760383
Length
64 bp
Sequences
Splice sites
3' ss Seq
ACCATCTCTCTATCCCCCAGGGT
3' ss Score
11.1
5' ss Seq
TTGGTCCCC
5' ss Score
-10.43
Exon sequences
Seq C1 exon
GGCTCTCCTGGTGAACAAGGCCCCTCTGGAGCTTCTGGTCCTGCAGGTCCCCGG
Seq A exon
GGTCCCCCTGGCTCTGCTGGTTCTCCTGGCAAAGATGGACTCAACGGTCTCCCTGGCCCCATTG
Seq C2 exon
GGTCCCCCCGGACCTCCTGGACCCCCTGGCCCTCCCGGTCCTCCCAGCGGTGGTTATGACTTCAGCTTCCTGCCTCAGCCACCTCAAGAGAAGTCTCAAGATGGTGGCCGTTACTACCGGGCCGATGATGCCAACGTGGTCCGTGACCGTGACCTTGAGGTGGACACTACCCTCAAGAGCCTGAGCCAGCAGATTGAGAACATCCGCAGCCCTGAGGGCAGCCGCAAGAACCCCGCCCGCACATGCCGTGACCTCAAGATGTGCCACTCTGACTGGAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'94-60,'94-59,95-60
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.863
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(23.3=77.8),PF0139113=Collagen=PU(12.7=44.4)
A:
PF0139113=Collagen=FE(55.6=100)
C2:
PF0139113=Collagen=PD(27.0=17.9),PF0141013=COLFI=PU(12.3=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCTGGAGCTTCTGGTC
R:
CGGCCACCATCTTGAGACTTC
Band lengths:
144-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]