GgaEX1016489 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23736442-23737389:+
Coord C1 exon
chr2:23736442-23736495
Coord A exon
chr2:23736629-23736736
Coord C2 exon
chr2:23737143-23737389
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGTTCAAGTTTTCTTCTAGGGT
3' ss Score
5.86
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGCCAACATGGTGATCAAGGTCCTCCTGGTAACAACGGTCCTGCTGGCCCAAGG
Seq A exon
GGTCCTCCTGGTCCTTCTGGTCCTCCTGGTAAGGATGGTCGCAATGGTCTCCCTGGACCCATTGGCCCTGCTGGTGTACGTGGATCTCATGGTAGCCAAGGCCCTGCT
Seq C2 exon
GGCCCTCCTGGCCCTCCTGGTCCCCCTGGCCCCCCTGGTCCCAATGGTGGCGGATATGAAGTTGGCTTTGATGCAGAATACTACCGGGCTGATCAGCCTTCTCTCAGACCCAAGGATTATGAAGTTGATGCCACTCTGAAAACATTGAACAACCAAATTGAGACCCTGCTGACCCCAGAAGGCTCCAAAAAGAACCCGGCTCGCACCTGCCGTGACCTCAGACTTAGCCACCCAGAATGGAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-39/39=38-C2
Average complexity
S
Mappability confidence:
96%=96=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0141013=COLFI=PU(12.3=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACATGGTGATCAAGGT
R:
CCGGGTTCTTTTTGGAGCCTT
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]