Special

BtaEX6026222 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11657295-11658387:+
Coord C1 exon
chr4:11657295-11657348
Coord A exon
chr4:11657471-11657578
Coord C2 exon
chr4:11658129-11658387
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGGTGTCCTTCTTTCCTAGGGC
3' ss Score
10.46
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCATCATGGCGATCAAGGTGCTCCCGGTGCTGTGGGTCCCGCTGGTCCCAGG
Seq A exon
GGCCCTGCTGGTCCTTCTGGCCCCGCTGGCAAAGACGGTCGCATTGGACAGCCTGGTGCAGTCGGACCTGCTGGCATTCGTGGCTCTCAGGGTAGCCAAGGTCCTGCT
Seq C2 exon
GGCCCTCCTGGTCCCCCTGGCCCTCCTGGACCTCCTGGCCCAAGTGGTGGTGGTTACGAGTTTGGTTTTGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCACCAACTTCTCTCAGACCCAAGGATTATGAAGTTGATGCTACTCTGAAATCTCTCAACAACCAGATTGAGACCCTTCTTACTCCAGAAGGCTCTAGGAAGAACCCAGCTCGCACATGCCGAGACTTGAGACTCAGCCACCCAGAATGGAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'52-54,'52-53,55-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=0.874
Domain overlap (PFAM):

C1:
PF0139113=Collagen=PU(11.3=44.4)
A:
PF0139113=Collagen=FE(49.3=100)
C2:
PF0139113=Collagen=PD(35.2=28.7),PF0141013=COLFI=PU(12.4=31.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGGCGATCAAGGTGCTC
R:
GGTTCTTCCTAGAGCCTTCTGGA
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]