DreEX0023156 @ danRer10
Exon Skipping
Gene
ENSDARG00000020007 | col1a2
Description
collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
Coordinates
chr19:41412672-41413353:+
Coord C1 exon
chr19:41412672-41412725
Coord A exon
chr19:41412815-41412922
Coord C2 exon
chr19:41413107-41413353
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTCTACCATTTATCTTTAGGGC
3' ss Score
10.18
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCTTCTGGTGACAGTGGGCCTGCTGGCATTGCTGGACCTTCCGGTCCAAGA
Seq A exon
GGCCCAGCTGGTCCCAATGGCCCCGCTGGTAAAGATGGTTCAAATGGCATGCCTGGTGCAATTGGACCCCCAGGACACCGTGGTCCCGCTGGACATGTTGGACCTGCT
Seq C2 exon
GGTCCTCCTGGATCTCCTGGTCTTCCCGGACCCCCTGGCCCATCTGGAGGTGGATATGACACATCTGGAGGCTATGATGAGTACAGAGCTGACCAGGCCTCTCTTAGAGCCAAGGATTACGAGGTGGATGCCACCATCAAGTCCTTGAACACTCAGATTGAGAATCTGCTTTCCCCTGAGGGCTCAAAGAAGAACCCCGCTCGTACTTGCCGTGACATCAGGCTCAGCCACCCAGAATGGAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020007_MULTIEX1-24/24=23-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.867
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100),PF0139113=Collagen=PU(8.2=27.8)
A:
PF0139113=Collagen=PD(5.6=11.1),PF0139113=Collagen=FE(57.4=100)
C2:
PF0139113=Collagen=PD(29.5=21.7),PF0141013=COLFI=PU(12.4=32.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCATTGCTGGACCTTCC
R:
CCTGATGTCACGGCAAGTACG
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]