MmuEX6002775 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4537173-4538036:+
Coord C1 exon
chr6:4537173-4537226
Coord A exon
chr6:4537350-4537457
Coord C2 exon
chr6:4537778-4538036
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCGGTATCCTTTCTTTTTAGGGT
3' ss Score
9.76
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCCTACATGGTGACCAAGGAGCTCCTGGTCCTGTGGGTCCTGCTGGTCCCAGG
Seq A exon
GGTCCTGCTGGGCCTTCTGGACCCGTTGGCAAAGATGGTAGATCTGGGCAACCTGGCCCAGTCGGGCCTGCTGGTGTTCGTGGTTCTCAGGGTAGCCAAGGTCCCGCT
Seq C2 exon
GGTCCCCCTGGTCCCCCTGGACCTCCTGGTCCTCCTGGTGTCAGCGGAGGTGGCTATGACTTTGGTTTTGAAGGAGACTTCTACAGGGCTGACCAGCCTCGCTCCCAGCCTTCACTCAGACCCAAGGACTATGAAGTTGATGCAACTCTGAAATCTCTCAATAACCAGATTGAGACCCTTCTCACTCCTGAAGGCTCTAGAAAGAACCCTGCTCGCACGTGCCGGGACTTAAGACTCAGCCACCCAGAGTGGAACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'79-74,'79-72,80-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.897
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(11.4=44.4)
A:
PF0139113=Collagen=FE(50.0=100)
C2:
PF0139113=Collagen=PD(34.3=27.6),PF0141013=COLFI=PU(12.4=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACATGGTGACCAAGGAGC
R:
AGAGCCTTCAGGAGTGAGAAG
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types