BtaEX0009659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017282 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr6:17623703-17626402:+
Coord C1 exon
chr6:17623703-17623771
Coord A exon
chr6:17624745-17624789
Coord C2 exon
chr6:17626358-17626402
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTATATTCTTCTATAATAGGGG
3' ss Score
7.55
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTGAACGTGGGGAGGCAGGGCCTCCTGGACGAGGGGATCGAGGGGAGCCCGGAGCCCCTGGACCAAAG
Seq A exon
GGGAAACAAGGTGAATCAGGAACTAGAGGCCCGAAAGGGTCAAAG
Seq C2 exon
GGCGATCGTGGAGACAAGGGGGACTCTGGAGCCCTGGGACCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017282_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(36.1=100),PF0139113=Collagen=PU(20.7=52.2)
A:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=FE(24.1=100)
C2:
PF0139113=Collagen=PD(1.6=5.9),PF0139113=Collagen=FE(27.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGTGGGGAGGCAG
R:
GTCCCAGGGCTCCAGAGTC
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development