RnoEX0023099 @ rn6
Exon Skipping
Gene
ENSRNOG00000050706 | Col25a1
Description
collagen type XXV alpha 1 chain [Source:RGD Symbol;Acc:1590105]
Coordinates
chr2:235663652-235666734:+
Coord C1 exon
chr2:235663652-235663720
Coord A exon
chr2:235664470-235664514
Coord C2 exon
chr2:235666690-235666734
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCATGCTCTCTTACAATAGGGG
3' ss Score
7.51
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCGAACGTGGGGAGGCAGGGCCTCCTGGAAGAGGTGAACGAGGGGATCCTGGAGCCCCGGGGCCAAAG
Seq A exon
GGGAAGCAAGGTGAATCAGGAGCTAGAGGCCCCAAGGGGTCAAAG
Seq C2 exon
GGTGATCGTGGAGACAAAGGAGACTCTGGAGCTCTGGGACCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050706_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.6=43.5),PF0139113=Collagen=PU(22.8=56.5)
A:
PF0139113=Collagen=FE(24.6=100)
C2:
PF0139113=Collagen=FE(24.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGGGGAGGCAGGG
R:
GTGGTCCCAGAGCTCCAGAG
Band lengths:
109-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]