MmuEX0012249 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130252093-130254922:+
Coord C1 exon
chr3:130252093-130252161
Coord A exon
chr3:130252955-130252999
Coord C2 exon
chr3:130254878-130254922
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGCATACTCTCTTATAATAGGGG
3' ss Score
6.42
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTGATCGTGGGGAGGCGGGGCCTCCTGGAAGAGGTGAACGAGGAGATCCTGGAGCCCCGGGGCCAAAG
Seq A exon
GGGAAGCAAGGTGAATCAGGAGCTAGAGGCCCGAAGGGGTCAAAG
Seq C2 exon
GGTGATCGTGGAGACAAAGGAGACTCTGGCGCTCTGGGACCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(18.8=52.2),PF0139113=Collagen=PU(26.7=69.6)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=PD(20.0=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCGTGGGGAGGCG
R:
TCCCAGAGCGCCAGAGTC
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: