BtaEX0009743 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51871319-51871923:+
Coord C1 exon
chr22:51871319-51871378
Coord A exon
chr22:51871474-51871509
Coord C2 exon
chr22:51871888-51871923
Length
36 bp
Sequences
Splice sites
3' ss Seq
AATCTCTGAACCCCTTTCAGGGC
3' ss Score
7.76
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTGACTGTGAAGATGGAGCCCCGGGCCTCCCAGGACAACCCGGAATTCCGGGTGAGCGG
Seq A exon
GGCCTTCGGGGACTTCCTGGAGATGCTGGCCCCAAA
Seq C2 exon
GGCGACCGAGGACTAACAGGGGCCGCTGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'40-43,'40-42,41-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.4=15.0),PF0139113=Collagen=FE(29.7=100)
A:
PF0139113=Collagen=FE(17.2=100)
C2:
PF0139113=Collagen=PD(3.1=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACTGTGAAGATGGAGCC
R:
CTTCTCTCCAGCGGCCCC
Band lengths:
96-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development