MmuEX7006508 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108965438-108965855:+
Coord C1 exon
chr9:108965438-108965497
Coord A exon
chr9:108965579-108965614
Coord C2 exon
chr9:108965811-108965855
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCCATTCATCCTTTCCAGGGC
3' ss Score
10.97
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTGACTGTGAGGATGGAGGTCCAGGCCTCCCAGGACAGCCTGGGCCCCCAGGGGAGCCG
Seq A exon
GGCCTGCGGGGAGCTCCTGGAATGACTGGGCCCAAA
Seq C2 exon
GGTGATCGGGGACTGACGGGGACCCCGGGCGAGCCTGGAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'37-62,'37-51,48-62=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.1=20.0),PF0139113=Collagen=PU(31.0=90.0)
A:
PF0139113=Collagen=FE(19.0=100)
C2:
PF0139113=Collagen=FE(24.1=100),PF0139113=Collagen=PU(8.2=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACTGTGAGGATGGAGGT
R:
CTTTACTCCAGGCTCGCCC
Band lengths:
105-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types