RnoEX6037793 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117706883-117707314:+
Coord C1 exon
chr8:117706883-117706942
Coord A exon
chr8:117707036-117707071
Coord C2 exon
chr8:117707270-117707314
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTCCATTCATCCTTCTCAGGGC
3' ss Score
10.1
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTGACTGTGAGGATGGAGGCCCAGGCCTTCCAGGACAGCCTGGGGTTCCAGGGGAACCG
Seq A exon
GGCCTGCGGGGAGCTCCTGGAGTTACTGGGCCCAAA
Seq C2 exon
GGTGATCGGGGACTGACAGGGACCCCGGGTGAGCCTGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'45-43,'45-42,46-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.4=15.0),PF0139113=Collagen=FE(22.1=100)
A:
PF0139113=Collagen=FE(12.8=100)
C2:
PF0139113=Collagen=FE(16.3=100),PF0139113=Collagen=PU(13.1=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGTGAGGATGGAGGCC
R:
CTTCTCTCCAGGCTCACCCG
Band lengths:
104-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]